https://microbinfie.github.io/2019/09/17/trailer.html 2019-09-17T00:00:00+00:00 https://microbinfie.github.io/2019/09/19/what-software-not-to-write-1.html 2019-09-19T00:00:00+00:00 https://microbinfie.github.io/2019/10/03/what-software-not-to-write.html 2019-10-03T00:00:00+00:00 https://microbinfie.github.io/2019/10/17/fastq-all-your-bases.html 2019-10-17T00:00:00+00:00 https://microbinfie.github.io/2019/10/31/02-history-of-genotyping-the-early-years.html 2019-10-31T00:00:00+00:00 https://microbinfie.github.io/2019/11/14/05-history-of-genotyping-decentralised-future.html 2019-11-14T00:00:00+00:00 https://microbinfie.github.io/2019/11/28/06-writing-good-bioinformatics-software-with-torsten-seemann.html 2019-11-28T00:00:00+00:00 https://microbinfie.github.io/2019/12/12/07-wham-bam-thank-you-sam.html 2019-12-12T00:00:00+00:00 https://microbinfie.github.io/2019/12/26/looking-back-at-the.html 2019-12-26T00:00:00+00:00 https://microbinfie.github.io/2020/01/09/09-nobel-prize-or-contamination.html 2020-01-09T00:00:00+00:00 https://microbinfie.github.io/2020/01/23/10-history-of-file-formats.html 2020-01-23T00:00:00+00:00 https://microbinfie.github.io/2020/02/06/11-phylogenetics-with-the-arborists-part1.html 2020-02-06T00:00:00+00:00 https://microbinfie.github.io/2020/02/20/12-phylogenetics-with-the-arborists-part2.html 2020-02-20T00:00:00+00:00 https://microbinfie.github.io/2020/03/05/13-questions-not-to-ask.html 2020-03-05T00:00:00+00:00 https://microbinfie.github.io/2020/03/19/14-la-resistance-lives-on-the-amr-deep-dive.html 2020-03-19T00:00:00+00:00 https://microbinfie.github.io/2020/04/02/15-bioinformatics-war-stories.html 2020-04-02T00:00:00+00:00 https://microbinfie.github.io/2020/04/16/16-bayesian-magic-dealing-with-theory.html 2020-04-16T00:00:00+00:00 https://microbinfie.github.io/2020/04/30/17-bayesian-magic-in-practice.html 2020-04-30T00:00:00+00:00 https://microbinfie.github.io/2020/05/14/18-has-nanopore-rendered-onsite-illumina-obsolete.html 2020-05-14T00:00:00+00:00 https://microbinfie.github.io/2020/05/28/microbinfies-assemble.html 2020-05-28T00:00:00+00:00 https://microbinfie.github.io/2020/06/11/20-assembly-read-healing.html 2020-06-11T00:00:00+00:00 https://microbinfie.github.io/2020/06/16/coronavirus-sequencing-qib.html 2020-06-16T00:00:00+00:00 https://microbinfie.github.io/2020/06/25/22-assembly-after-party.html 2020-06-25T00:00:00+00:00 https://microbinfie.github.io/2020/07/02/23-coronahit-nanopore.html 2020-07-02T00:00:00+00:00 https://microbinfie.github.io/2020/07/16/24-experimental-projects-lead-to-experimental-software.html 2020-07-16T00:00:00+00:00 https://microbinfie.github.io/2020/07/30/25-sustainable-bioinformatics-software.html 2020-07-30T00:00:00+00:00 https://microbinfie.github.io/2020/08/13/26-sars-cov-2-metadata.html 2020-08-13T00:00:00+00:00 https://microbinfie.github.io/2020/08/13/27-deep-dive-into-snp-sites.html 2020-08-13T00:00:00+00:00 https://microbinfie.github.io/2020/08/27/28-brig-the-blast-ring-image-generator.html 2020-08-27T00:00:00+00:00 https://microbinfie.github.io/2020/09/10/mashtree-software-deep-dive.html 2020-09-10T00:00:00+00:00 https://microbinfie.github.io/2020/09/17/30-how-we-made-the-podcast.html 2020-09-17T00:00:00+00:00 https://microbinfie.github.io/2020/10/01/31-large-scale-sequencing-of-sars-cov-2-genomes-from-one-region.html 2020-10-01T00:00:00+00:00 https://microbinfie.github.io/2020/10/15/majora.html 2020-10-15T00:00:00+00:00 https://microbinfie.github.io/2020/10/29/33-bioinformatics-training.html 2020-10-29T00:00:00+00:00 https://microbinfie.github.io/2020/11/12/34-moving-from-wet-to-dry-with-phil-ashton.html 2020-11-12T00:00:00+00:00 https://microbinfie.github.io/2020/11/26/35-the-wandering-bioinformatician.html 2020-11-26T00:00:00+00:00 https://microbinfie.github.io/2020/12/10/roary-the-pangenome-pipeline.html 2020-12-10T00:00:00+00:00 https://microbinfie.github.io/2020/12/24/ontology.html 2020-12-24T00:00:00+00:00 https://microbinfie.github.io/2021/01/07/38-ontology-2.html 2021-01-07T00:00:00+00:00 https://microbinfie.github.io/2021/01/16/explaining-the-naming-of-sars-cov-2-new-variants.html 2021-01-16T00:00:00+00:00 https://microbinfie.github.io/2021/01/18/40-a-crash-course-in-sars-cov-2-bioinformatics.html 2021-01-18T00:00:00+00:00 https://microbinfie.github.io/2021/01/19/41-sars-cov-2-phylogenomics-questions-answered.html 2021-01-19T00:00:00+00:00 https://microbinfie.github.io/2021/01/20/42-overcoming-barriers-to-sars-cov-2-data-analysis.html 2021-01-20T00:00:00+00:00 https://microbinfie.github.io/2021/01/21/43-why-use-genomics-in-an-epidemic.html 2021-01-21T00:00:00+00:00 https://microbinfie.github.io/2021/01/22/44-how-to-sequence-sars-cov-2-using-the-artic-protocol.html 2021-01-22T00:00:00+00:00 https://microbinfie.github.io/2021/02/04/software-deep-dive-enterobase.html 2021-02-04T00:00:00+00:00 https://microbinfie.github.io/2021/02/08/46-sars-cov-2-genomics-resources.html 2021-02-08T00:00:00+00:00 https://microbinfie.github.io/2021/02/08/47-sars-cov-2-rapid-roundup-and-questions-answered.html 2021-02-08T00:00:00+00:00 https://microbinfie.github.io/2021/02/20/48-sars-cov-2-more-variants-of-concern-and-updates-from-africa.html 2021-02-20T00:00:00+00:00 https://microbinfie.github.io/2021/02/22/49-sars-cov-2-tools-and-resources-update.html 2021-02-22T00:00:00+00:00 https://microbinfie.github.io/2021/02/25/50-atypical-invasive-non-typhoidal-salmonella-in-the-gambia.html 2021-02-25T00:00:00+00:00 https://microbinfie.github.io/2021/03/11/51-sarscov2-round-up-3-and-updates-from-denmark.html 2021-03-11T00:00:00+00:00 https://microbinfie.github.io/2021/03/18/sars-cov-2-sequencing-in-denmark-with-mads-albertsen.html 2021-03-18T00:00:00+00:00 https://microbinfie.github.io/2021/03/25/sars-cov-2-surveillance-in-canada-with-cancogen.html 2021-03-25T00:00:00+00:00 https://microbinfie.github.io/2021/04/01/54-harmonising-sars-cov-2-surveillance-in-canada-with-cancogen.html 2021-04-01T00:00:00+00:00 https://microbinfie.github.io/2021/04/08/55-sars-cov-2-and-sequencing-spike-with-sanger-sequencing-welcome-to-1996.html 2021-04-08T00:00:00+00:00 https://microbinfie.github.io/2021/04/21/56-sars-cov-2-and-sequencing-spike-with-sanger-sequencing-welcome-to-1995.html 2021-04-21T00:00:00+00:00 https://microbinfie.github.io/2021/05/07/staph-b-part-1.html 2021-05-07T00:00:00+00:00 https://microbinfie.github.io/2021/05/21/58-staph-b-careers-with-curtis-kapsak-and-kevin-libuit.html 2021-05-21T00:00:00+00:00 https://microbinfie.github.io/2021/06/03/59a-microbe-moment-micro-binfie.html 2021-06-03T00:00:00+00:00 https://microbinfie.github.io/2021/06/17/60-whats-in-a-name-salmonella-and-e-coli.html 2021-06-17T00:00:00+00:00 https://microbinfie.github.io/2021/07/01/encore-06-what-software-not-to-write.html 2021-07-01T00:00:00+00:00 https://microbinfie.github.io/2021/09/02/61-non-fungible-tokens-you-too-can-own-brca1.html 2021-09-02T00:00:00+00:00 https://microbinfie.github.io/2021/09/16/62-campylobacter-the-fussy-little-pathogen.html 2021-09-16T00:00:00+00:00 https://microbinfie.github.io/2021/09/30/63-a-dive-into-campylobacter-genomics.html 2021-09-30T00:00:00+00:00 https://microbinfie.github.io/2021/10/14/64-mycobacterium-tuberculosis-the-forgotten-pandemic.html 2021-10-14T00:00:00+00:00 https://microbinfie.github.io/2021/10/28/65-genomics-of-mycobacterium-tuberculosis.html 2021-10-28T00:00:00+00:00 https://microbinfie.github.io/2021/11/02/how-to-review-a-bioinformatics-paper-in-10-days-or-less.html 2021-11-02T00:00:00+00:00 https://microbinfie.github.io/2021/11/18/66-scholarly-communications-for-bioinformaticians.html 2021-11-18T00:00:00+00:00 https://microbinfie.github.io/2021/11/25/whats-in-a-name-part-1.html 2021-11-25T00:00:00+00:00 https://microbinfie.github.io/2021/12/09/whats-in-a-name-part-2.html 2021-12-09T00:00:00+00:00 https://microbinfie.github.io/2021/12/16/69-background-to-bacterial-taxonomy.html 2021-12-16T00:00:00+00:00 https://microbinfie.github.io/2021/12/17/bacterial-taxonomy-into-the-unknown-seqcode-naming-uncultured-multitudes-and-renaming-of-phyla.html 2021-12-17T00:00:00+00:00 https://microbinfie.github.io/2021/12/17/bacterial-taxonomy-the-grand-vista-is-ahead-of-us.html 2021-12-17T00:00:00+00:00 https://microbinfie.github.io/2022/01/06/bactopia-part-1.html 2022-01-06T00:00:00+00:00 https://microbinfie.github.io/2022/01/20/bactopia-part-2.html 2022-01-20T00:00:00+00:00 https://microbinfie.github.io/2022/02/03/sepia-with-henk-soup-or-salad-yes.html 2022-02-03T00:00:00+00:00 https://microbinfie.github.io/2022/03/03/what-are-the-major-challenges-for-getting-amr-genomics-into-the-clinic.html 2022-03-03T00:00:00+00:00 https://microbinfie.github.io/2022/03/17/genomics-for-a-new-era.html 2022-03-17T00:00:00+00:00 https://microbinfie.github.io/2022/03/31/staph-b-state-public-health.html 2022-03-31T00:00:00+00:00 https://microbinfie.github.io/2022/04/14/staph-b-stable-containers.html 2022-04-14T00:00:00+00:00 https://microbinfie.github.io/2022/04/28/sars-cov-2-datasets-part-1.html 2022-04-28T00:00:00+00:00 https://microbinfie.github.io/2022/04/29/behind-sars-cov-2-datasets.html 2022-04-29T00:00:00+00:00 https://microbinfie.github.io/2022/05/12/bioinformatics-moments-before-the-millennium.html 2022-05-12T00:00:00+00:00 https://microbinfie.github.io/2022/05/26/a-short-journey-into-mobile-genetic-elements.html 2022-05-26T00:00:00+00:00 https://microbinfie.github.io/2022/06/09/bioinformatics-in-the-noughties.html 2022-06-09T00:00:00+00:00 https://microbinfie.github.io/2022/06/23/85-breaking-the-dogma-with-bioinformatics.html 2022-06-23T00:00:00+00:00 https://microbinfie.github.io/2022/07/07/85-whats-next-for-nextstrain.html 2022-07-07T00:00:00+00:00 https://microbinfie.github.io/2022/07/21/nextstrain-sarscov2-and-dealing-with-a-data-deluge.html 2022-07-21T00:00:00+00:00 https://microbinfie.github.io/2022/08/04/sepia-directors-cut.html 2022-08-04T00:00:00+00:00 https://microbinfie.github.io/2022/09/15/what-do-we-do-with-wdl.html 2022-09-15T00:00:00+00:00 https://microbinfie.github.io/2022/09/29/public-health-bioinformatics-on-the-cloud-with-wdl-terrabio.html 2022-09-29T00:00:00+00:00 https://microbinfie.github.io/2022/10/13/91-what-language-should-i-learn.html 2022-10-13T00:00:00+00:00 https://microbinfie.github.io/2022/10/27/avoid-dependency-hell-and-get-up-and-running-fast.html 2022-10-27T00:00:00+00:00 https://microbinfie.github.io/2022/11/10/93-roary-troubleshooting-and-issues.html 2022-11-10T00:00:00+00:00 https://microbinfie.github.io/2022/11/17/the-great-scientific-mastodon-migration.html 2022-11-17T00:00:00+00:00 https://microbinfie.github.io/2022/12/08/lost-in-translation-with-torsten-seemann.html 2022-12-08T00:00:00+00:00 https://microbinfie.github.io/2022/12/22/immem-xiii-and-asm-ngs.html 2022-12-22T00:00:00+00:00 https://microbinfie.github.io/2022/12/29/advances-in-sequencing-technologies.html 2022-12-29T00:00:00+00:00 https://microbinfie.github.io/2023/01/12/nomadic-bioinformatics-with-frank.html 2023-01-12T00:00:00+00:00 https://microbinfie.github.io/2023/01/26/99-stories-from-the-frontlines-of-bioinformatics.html 2023-01-26T00:00:00+00:00 https://microbinfie.github.io/2023/02/09/100th-episode.html 2023-02-09T00:00:00+00:00 https://microbinfie.github.io/2023/02/23/one-health.html 2023-02-23T00:00:00+00:00 https://microbinfie.github.io/2023/03/09/early-days-of-mlst.html 2023-03-09T00:00:00+00:00 https://microbinfie.github.io/2023/03/23/release-the-kraken.html 2023-03-23T00:00:00+00:00 https://microbinfie.github.io/2023/04/06/the-kraken-software-suite.html 2023-04-06T00:00:00+00:00 https://microbinfie.github.io/2023/04/20/mobile-genetic-elements-panel.html 2023-04-20T00:00:00+00:00 https://microbinfie.github.io/2023/04/27/research-careers-discussion-with-postdoc-panel.html 2023-04-27T00:00:00+00:00 https://microbinfie.github.io/2023/05/11/nomenclature-systematics-and-taxonomy.html 2023-05-11T00:00:00+00:00 https://microbinfie.github.io/2023/05/25/seqcode-a-nomenclatural-code-for-prokaryotes-described-from-sequence-data.html 2023-05-25T00:00:00+00:00 https://microbinfie.github.io/2023/06/08/109-what-language-should-i-learn.html 2023-06-08T00:00:00+00:00 https://microbinfie.github.io/2023/06/22/ai-unleashed-navigating-the-opportunities-and-challenges-of-ai-in-microbial-bioinformatics.html 2023-06-22T00:00:00+00:00 https://microbinfie.github.io/2023/07/06/chatgpt-the-bioinformatics-calculator.html 2023-07-06T00:00:00+00:00 https://microbinfie.github.io/2023/09/16/global-microbial-identifier-with-finlay-maguire-and-emma-griffiths.html 2023-09-16T00:00:00+00:00 https://microbinfie.github.io/2023/09/17/112-global-microbial-identifier-conference-with-will-hsiao.html 2023-09-17T00:00:00+00:00 https://microbinfie.github.io/2023/09/18/113-global-microbial-identifier-conference-with-ruth-timme.html 2023-09-18T00:00:00+00:00 https://microbinfie.github.io/2023/11/04/write-the-automating-code-documentation-chatgpt.html 2023-11-04T00:00:00+00:00 https://microbinfie.github.io/2023/11/09/write-the-speeding-up-software-development-for-bioinformatics.html 2023-11-09T00:00:00+00:00 https://microbinfie.github.io/2023/11/23/116-ai-authorship-and-ethics-in-academic-publishing-for-genomics.html 2023-11-23T00:00:00+00:00 https://microbinfie.github.io/2023/12/07/titus-brown-1.html 2023-12-07T00:00:00+00:00 https://microbinfie.github.io/2023/12/21/real-bioinformaticians-react-to-jurassic-park.html 2023-12-21T00:00:00+00:00 https://microbinfie.github.io/2024/01/04/titus-3.html 2024-01-04T00:00:00+00:00 https://microbinfie.github.io/2024/01/18/titus-4.html 2024-01-18T00:00:00+00:00 https://microbinfie.github.io/2024/02/01/titus-2.html 2024-02-01T00:00:00+00:00 https://microbinfie.github.io/2024/03/09/gambit-genomic-approximation-method-for-bacterial-identification-and-tracking.html 2024-03-09T00:00:00+00:00 https://microbinfie.github.io/2024/03/21/123-hash-databases-for-cgmlst.html 2024-03-21T00:00:00+00:00 https://microbinfie.github.io/2024/05/23/kostas-konstantinidis-talks-to-us-about-ani-and-metagenomics.html 2024-05-23T00:00:00+00:00 https://microbinfie.github.io/2024/06/06/kostas-konstantinidis-returns-to-talk-to-us-about-ani-and-metagenomics.html 2024-06-06T00:00:00+00:00 https://microbinfie.github.io/2024/08/22/126-tree-viz.html 2024-08-22T00:00:00+00:00 https://microbinfie.github.io/2024/09/05/127-minimum-spanning-trees.html 2024-09-05T00:00:00+00:00 https://microbinfie.github.io/2024/09/19/128-haiti-cholera-outbreak-with-christine-lee-and-cynney-walters.html 2024-09-19T00:00:00+00:00 https://microbinfie.github.io/2024/10/11/129-genomics-on-the-frontier-bactopia-bioinformatics-and-pathogen-surveillance-with-robert-petit.html 2024-10-11T00:00:00+00:00 https://microbinfie.github.io/2024/10/25/130-exploring-genomic-innovation-and-machine-learning-in-public-health.html 2024-10-25T00:00:00+00:00 https://microbinfie.github.io/2024/11/07/131-bioinformatics-evolution-torsten-seemann-on-snippy-open-source-support-and-global-genomics.html 2024-11-07T00:00:00+00:00 https://microbinfie.github.io/2024/11/21/132-unlocking-the-secrets-of-antimicrobial-resistance-in-metagenomes.html 2024-11-21T00:00:00+00:00 https://microbinfie.github.io/2024/12/05/133-public-health-insights-on-bioinformatics-from-utah.html 2024-12-05T00:00:00+00:00 https://microbinfie.github.io/2024/12/05/diving-into-mrsa-genomics-and-public-health.html 2024-12-05T00:00:00+00:00 https://microbinfie.github.io/2024/12/16/135-contagion-part-1.html 2024-12-16T00:00:00+00:00 https://microbinfie.github.io/2024/12/18/141-hackathon-panel.html 2024-12-18T00:00:00+00:00 https://microbinfie.github.io/2024/12/19/134-assembling-atcc-bacterial-strains.html 2024-12-19T00:00:00+00:00 https://microbinfie.github.io/2025/01/02/136-contagion-part-2.html 2025-01-02T00:00:00+00:00 https://microbinfie.github.io/2025/01/16/decoding-tetracycline-resistance-in-mrsa.html 2025-01-16T00:00:00+00:00 https://microbinfie.github.io/2025/06/19/137-lassa-virus-genomics.html 2025-06-19T00:00:00+00:00 https://microbinfie.github.io/2025/07/03/137-exploring-clinical-metagenomics.html 2025-07-03T00:00:00+00:00 https://microbinfie.github.io/2025/08/07/microbinfie-genomeqc.html 2025-08-07T00:00:00+00:00 https://microbinfie.github.io/2025/08/28/143-where-we-catch-up-on-our-professional-lives.html 2025-08-28T00:00:00+00:00 https://microbinfie.github.io/2025/09/11/micro-binfie-pathoplexus-part.html 2025-09-11T00:00:00+00:00 https://microbinfie.github.io/2025/09/25/144-micro-binfie-pathoplexus-part-2.html 2025-09-25T00:00:00+00:00 https://microbinfie.github.io/2025/10/16/146-nextflow-debate-1.html 2025-10-16T00:00:00+00:00 https://microbinfie.github.io/2025/10/30/147-nextflow-debate-2.html 2025-10-30T00:00:00+00:00 https://microbinfie.github.io/2025/11/13/nextflow-debate-3.html 2025-11-13T00:00:00+00:00 https://microbinfie.github.io/2026/02/09/bridging-ai-biosciences.html 2026-02-09T00:00:00+00:00 https://microbinfie.github.io/2026/03/12/150-genomicx.html 2026-03-12T00:00:00+00:00 https://microbinfie.github.io/2026/03/26/151-deacon-part-1.html 2026-03-26T00:00:00+00:00 https://microbinfie.github.io/2026/04/09/152-deacon-part-2.html 2026-04-09T00:00:00+00:00 https://microbinfie.github.io/2026/07/23/153-seebot.html 2026-07-23T00:00:00+00:00 https://microbinfie.github.io/2026/08/20/154-boston-women-in.html 2026-08-20T00:00:00+00:00 https://microbinfie.github.io/2026/09/17/155-ancient-problems-require.html 2026-09-17T00:00:00+00:00 https://microbinfie.github.io/pages/archive/Episodes.html https://microbinfie.github.io/pages/Episodes.html https://microbinfie.github.io/pages/Multimedia.html https://microbinfie.github.io/pages/Press.html https://microbinfie.github.io/pages/Profiles.html https://microbinfie.github.io/pages/about.html https://microbinfie.github.io/archive.html https://microbinfie.github.io/pages/book.html https://microbinfie.github.io/ https://microbinfie.github.io/pages/open_art.html https://microbinfie.github.io/SECURITY.html https://microbinfie.github.io/8th%20Microbial%20Bioinformatics%20hackathon.pdf 2026-10-11T12:19:31+00:00 https://microbinfie.github.io/assets/Taxonomy_Selective_bibliography.pdf 2026-10-11T12:19:31+00:00 https://microbinfie.github.io/assets/book/nobody-wrote-this-down.html 2026-10-11T12:19:31+00:00 https://microbinfie.github.io/assets/realfavicongenerator.net/head.html 2026-10-11T12:19:31+00:00